Welcome to the Atlas of GWAS Summary Statistics
This atlas is a database of publicly available GWAS summary statistics. Each GWAS can be browsed with the manhattan plot, risk loci, MAGMA (i.e. gene-based) results, SNP heritability and genetic correlations with other GWAS in the database. 600 GWAS were performed in this project based on UK Biobank release 2 data under application ID 16406. Full summary statistics can be downloaded from the original source following the provided links.
If you have/find GWAS summary statistics that are publicly available and not included in this database, please let us know from Report GWAS page. We appreciate any contribution to make the GWAS atlas as comprehensive as possible!! Contributions are acknowledged at the bottom of this page (except anonymous submissions).
Watanabe, K. et al. A global overview of pleiotropy and genetic architecture in complex traits. Nat. Genet. 51, 1339-1348 (2019). PMID: 31427789
Currently the database contains GWAS from unique studies across unique traits and domains.
Multiple GWAS comparison
Plain text file: gwasATLAS_v20191115.txt.gz
Excel file: gwasATLAS_v20191115.xlsx.gz
Used column names: gwasATLAS_v20191115_columns.txt.gz
Full pair-wise genetic correlation: gwasATLAS_v20191115_GC.txt.gz
Full MAGMA gene P-values: gwasATLAS_v20191115_magma_P.txt.gz
Full MAGMA gene-set P-values (MsigDB v7.0): gwasATLAS_v20191115_magma_sets_P.txt.gz
Full risk loci: gwasATLAS_v20191115_riskloci.txt.gz
Release 2: v20190117
Plain text file: gwasATLAS_v20190117.txt.gz
Excel file: gwasATLAS_v20190117.xlsx.gz
Release 1: v20180928
Acknowledgements for contributions
Names are ordered by the number of submissions (within square brackets), otherwise arbitral.